DNA 'Spiderbot' Crawls into Action

Could this nanobot soon be making its way to a microscopic assembly line?

THE GIST

A molecular robot made of DNA has been created by scientists.

The nanobot walks like a spider and follows a track made out of stitched-together strands of DNA.

In a separate study, another research team had enabled a nano-scale "assembly line."

Scientists on Wednesday announced they had created a molecular robot made out of DNA that walks like a spider along a track made out of the chemical code for life.

The achievement, reported in the British journal Nature, is a further step in nanoscale experiments that, one day, may lead to robot armies to clean arteries and fix damaged tissues.

The robot is just four nanometers -- four billionths of a meter -- in diameter.

Milan Stojanovic of New York's Columbia University, who led the venture, likens the nanobot to "a four-legged spider."

The beast moves along a track comprising stitched-together strands of DNA that is essentially a pre-programmed course, in the same way that industrial robots move along an assembly line.

The track exploits one of the basic characteristics of DNA. A double-helix molecule, DNA comprises four chemicals which pair in rungs.

By "unzipping" the DNA, one is left with one side of the strand whose rungs can then be paired up with matching rungs.

In other words, the track can be used rather like the teeth in a clockwork mechanism. A cog can move around the teeth, provided it meshes with them.

By using strands that correspond to sequences in the track, the robot can be made to walk, turn left or right as it is biochemically attracted to the next matching stretch.

The spider's "body" is a common protein called streptavidin.

Attached to it are three "legs" of single-strand enzymatic DNA, which binds to, and then cuts, a particular sequence of DNA. The fourth leg is a strand that anchors the spider to the starting point.

"After the robot is released from its start site by a trigger strand, it follows the track by binding to and then cutting the DNA strands," explained Stojanovic.

Once the strand is cut, the leg starts reaching for the next matching stretch of DNA in the track. In this way, the spider is guided down the path set by the researchers.

Eventually, the robot encounters a patch of DNA to which it can bind but cannot cut. At that point, it is immobilized.

Watching the spider strut its stuff was in itself a technical challenge.

The researchers used techniques called atomic force microscopy and single-molecule fluorescence microscopy which showed the molecular robots following four different paths.

Molecular robots have drawn huge interest because of the allure of programming them to sense their environment and react to it. For instance, they could note disease markers on a cell surface, decide that the cell is cancerous and needs to be destroyed and then deliver a compound to kill it.

Other DNA walkers have been developed in the past, but they have never ventured more than a few steps, said Hao Yan, a professor at Arizona State University.

"This one can walk about to about 100 nanometers. That's roughly 50 steps."

The next step is how to make the spider walk faster and how to make it more programmable, so that it can follow many commands on the track and make more decisions, Yan said.

In a separate study reported in Nature, Nadrian Seeman and colleagues from New York University said they had enabled a nano-scale "assembly line".

DNA walkers moved past three kinds of DNA machines that handed them a cargo of gold nano-particles, which are clutched with three "hands".

"This is the first time that systems of nano-machines, rather than individual devices have been used to perform operations, constituting a crucial advance in the evolution of DNA technology," said Lloyd Smith, a chemist at the University of Wisconsin at Madison, in a commentary also published by Nature.

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