DNA 'LEGOs' Build a Mini Space Shuttle

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Content provided by Jeremy Hsu, TechNewsDaily Senior Writer

DNA 'bricks' can self-assemble into complex 3D shapes such as a miniature space shuttle. Credit: Kurt V. Gothelf, Yonggang Ke et al.

A tiny space shuttle made out of DNA "LEGO bricks" shows how scientists

could someday build new technologies on the smallest scales.

Single DNA strands became "LEGO bricks"

that could assemble together by themselves into 102 individual 3D

shapes. Harvard researchers manipulated the DNA coding of the bricks so

that they could form solid shapes such as the tiny shuttle, honeycomb

structures, and even "written" features on a solid base such as numbers

and letters of the English alphabet.

"Once we know how to compile the correct code of complex shapes and add

it to the synthetic DNA strands, everything else is simple and

natural," said Yonggang Ke, a chemist at Harvard University. "Those DNA

strands are like smart LEGO bricks that know exactly where to go by

themselves."

DNA bricks offer a powerful new tool for building structures in the

tiniest detail, according to Ke and his colleagues in their study

detailed in the Nov. 29 online edition of the journal Science. The work

could lead to tiny medical devices for delivering drugs inside the human body or next-generation computer circuits.

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But the DNA nanotechnology breakthrough also touches upon one of

science's greatest mysteries — how life on Earth assembled itself from a

jumble of molecules in the primordial ooze. A DNA strand's width is

about 1 nanometer (1 billionth of a meter) — far smaller than a human

hair's width of 60,000 nanometers.

Replicating Life's Miracle

The idea of DNA bricks that can assemble into shapes on their own seems

fantastical for humans used to building things step-by-step. But it's

just a hint of what nature does all the time through self-assembly, Ke

said.

"All life forms on earth are self-assembled, in an environment of an

enormous amount of small molecules and macromolecules, such as DNA, RNA

and proteins — much, much messier than our small DNA "soup" in a test

tube," Ke told TechNewsDaily.

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The Harvard lab of Peng Yin, senior author on the new study, had used

DNA to build 2D shapes. The 3D breakthrough relied upon the bricks each

consisting of a single DNA strand with 32 nucleotides — DNA's building

block molecules — that can bind to as many as four neighboring bricks.

Two bricks connect to one another at a 90-degree angle to form a 3D

shape, similar to connecting a pair of two-stud LEGO bricks. Researchers

designed the 3D shapes they wanted by manipulating the coded "recipe"

of how DNA's base pair molecules bind to one another.

The DNA bricks method takes a long time — one shape resembling a cube

took 72 hours for self-assembly. But its success may still come as a

pleasant surprise for researchers who doubted it could be done.

LEGO Meets Origami

Many researchers believed that DNA self-assembly from hundreds or

thousands of DNA strands would prove too complicated or inefficient. 

They previously relied on a DNA origami method that folded a main

"scaffold" DNA strand into different shapes. Such origami folding takes

place through the scaffold strand's interactions with many short

"staple" DNA strands.

 

DNA 'bricks' created 3D letter and number shapes as seen through computer modeling (left) and microscopy images (right). Credit: Yonggang Ke, Wyss Institute, Harvard University

 

But the DNA origami method required researchers to create specific

scaffold strands and staple strands tailored for each unique shape they

wanted to build. By comparison, the DNA bricks represent a standard set

of building blocks that can flexibly join together to form many

different shapes.

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Still, Ke and his Harvard colleagues say that both the brick and

origami methods have their own strengths and weaknesses. They envision

using a combination of both methods in the future.

That approach is also embraced by Kurt Gothelf, head of the Center for

DNA Nanotechnology at Aarhus University in Denmark. Gothelf wrote an

independent paper on the Harvard team's work in the latest issue of the

journal Science.

"In my vision for a fusion of the two methods you use a DNA origami

core and then you can build various surfaces on this by the brick

method," Gothelf explained.

Building Bigger and Better

The DNA bricks method could quickly join the DNA origami method in

helping scientists do lab research. Gothelf suggested that commercial

uses of DNA bricks could also appear within the next five to 10 years.

"Personally, I am enthusiastic about the potential application of DNA nanotechnology to make intelligent drug-delivery vehicles and to arrange and wire molecular electronic components," Gothelf said.

Researchers may have figured out how to reliably design and make 3D

shapes from DNA, but they still don't know how the DNA pulls off its

seemingly miraculous trick of self-assembly. Nature figured out how

self-assembly could create living beings of all sizes and shapes over

billions of years of evolution, Ke said.

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Humans are "still playing catch-up with nature" by tinkering with the

DNA bricks," Ke explained. But the possibilities could be endless.

"For us, with limited time and resources, making structures about a

millimeter in size in this decade would be very impressive," Ke said.

"In term of shape complexity, I think virtually anything will be

possible."

You can follow TechNewsDaily Senior Writer Jeremy Hsu on Twitter @jeremyhsu. Follow TechNewsDaily on Twitter @TechNewsDaily, or on Facebook.

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